Phylogenetic Endemism Interpolated - PE

Description

This functor interpolates Phylogenetic endemism on the map. For more details abou index, see: Rosauer, D., Laffan, S. W., Crisp, M. D., Donnellan, S. C., & Cook, L. G. (2009). Phylogenetic endemism: a new approach for identifying geographical concentrations of evolutionary history. Molecular Ecology, 18(19), 4061–4072. doi:10.1111/j.1365-294X.2009.04311.x

Inputs

Name Type Description
Input Occurences csv file Csv file with species occurences (colunms sp, x, y).
Input Phylogenetic Tree tre file Input filogenetic tree in format “.tre”
Input Mask Map Filename Type The filename of the shape of area of study.
Output folder Folder Folder to save outputs.
Hexagon Size Real Value Type Value of Hexagon size
Save Hexagon Nmds Boolean Value Type Save maps with hexagons
Spline Interpolation Boolean Value Type Interpolate results by Spline
Kriging Interpolation Boolean Value Type Interpolate results by Kriging
Cell Size Real Value Type Cell size of output raster
Minimum Number Of Sambles Real Value Type Minimum number of samples in hexagons
Smooth Factor Of Spline Real Value Type Number of neighboring pixels in smooth
Smooth Factor Of Kriging Real Value Type Number of neighboring pixels in smooth

Group

Internal Name

BioDinamica