Species Composition Interpolation - SCI
Description
This functor spatially interpolates the beta-diversity patterns by using values of a NMDS of the beta-diversity index matrix. For more details see: Oliveira, U., Vasconcelos, M. F., & Santos, A. J. (2017). Biogeography of Amazon birds: rivers limit species composition, but not areas of endemism. Scientific Reports, 7(1), 2992. doi:10.1038/s41598-017-03098-w
Inputs
| Name | Type | Description |
|---|---|---|
| Input Occurences | csv file | Csv file with species occurences (colunms sp, x, y). |
| Output folder | Folder | Folder to save outputs. |
| Input Mask | Map Filename Type | The filename of the shape of area of study. |
| Hexagon Size | Real Value Type | Value of Hexagon size |
| Beta Diversity Index | Real Value Type | Beta Diversity Index: 1-Bray-Curtis; 2-Jaccard |
| Cell Size | Real Value Type | Cell size of output raster |
| Number Of Axis | Real Value Type | Define number of axis in NMDS analysis |
| Rounds Of Nmds Search | Real Value Type | Maximum numbers of random starts in search |
| Minimum Number Of Sambles | Real Value Type | Minimum number of samples in hexagons |
| Smooth Factor Of Spline | Real Value Type | Number of neighboring pixels in smooth |
| Spline Lambda | Real Value Type | Smoothing parameter the ratio of error and process variance in spline interpolation |
| Model In Kriging Interpolation | Real Value Type | Specification of the variogram model: 1- spherical, 2- exponential, 3- gaussian |
| Lags In Kriging Interpolation | Real Value Type | Number of lags |
| Smooth Factor Of Kriging | Real Value Type | Number of neighboring pixels in smooth |
| Classify Spline | Boolean Value Type | Classify areas by unsupervised classification |
| Number Of Classes Of Spline | Real Value Type | Number of classes in classification |
| Classify Kriging | Real Value Type | Classify areas by unsupervised classification |
| Number Of Classes Of Kriging | Real Value Type | Number of classes in classification |
Group
Internal Name
BioDinamica