Species Composition Interpolation - SCI

Description

This functor spatially interpolates the beta-diversity patterns by using values of a NMDS of the beta-diversity index matrix. For more details see: Oliveira, U., Vasconcelos, M. F., & Santos, A. J. (2017). Biogeography of Amazon birds: rivers limit species composition, but not areas of endemism. Scientific Reports, 7(1), 2992. doi:10.1038/s41598-017-03098-w

Inputs

Name Type Description
Input Occurences csv file Csv file with species occurences (colunms sp, x, y).
Output folder Folder Folder to save outputs.
Input Mask Map Filename Type The filename of the shape of area of study.
Hexagon Size Real Value Type Value of Hexagon size
Beta Diversity Index Real Value Type Beta Diversity Index: 1-Bray-Curtis; 2-Jaccard
Cell Size Real Value Type Cell size of output raster
Number Of Axis Real Value Type Define number of axis in NMDS analysis
Rounds Of Nmds Search Real Value Type Maximum numbers of random starts in search
Minimum Number Of Sambles Real Value Type Minimum number of samples in hexagons
Smooth Factor Of Spline Real Value Type Number of neighboring pixels in smooth
Spline Lambda Real Value Type Smoothing parameter the ratio of error and process variance in spline interpolation
Model In Kriging Interpolation Real Value Type Specification of the variogram model: 1- spherical, 2- exponential, 3- gaussian
Lags In Kriging Interpolation Real Value Type Number of lags
Smooth Factor Of Kriging Real Value Type Number of neighboring pixels in smooth
Classify Spline Boolean Value Type Classify areas by unsupervised classification
Number Of Classes Of Spline Real Value Type Number of classes in classification
Classify Kriging Real Value Type Classify areas by unsupervised classification
Number Of Classes Of Kriging Real Value Type Number of classes in classification

Group

Internal Name

BioDinamica